PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016409m
Common NameCICLE_v10016402mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 248aa    MW: 26791.2 Da    PI: 8.108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016409mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002795117123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Ciclev10016409m  95 FSCNYCRRKFYSSQALGGHQNAH 117
                      89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.92E-693123No hitNo description
PROSITE profilePS5015711.38595122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLPPNSNLEL ENDSEVSSHV ASNISAKEAS PGPSKDTNSS CLTNVIKLNP DPGPLSLDLT  60
LHFKSNDIDR LKGTGETSGE VAAAQTPAAT VPRVFSCNYC RRKFYSSQAL GGHQNAHKRE  120
RTMAKRAMRM GIFSDRYTSL ASLPLHGSAF RSLGIKAHAA MHQGVVPPQR PPDMRGGARF  180
EQGYFAMPMF MEDDDIDLFW PGSFRQVSEA VRGNPTLDFA QGSNGNFAAM PPPPRTDSSA  240
PDLTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469294.10.0PREDICTED: zinc finger protein 4
RefseqXP_006469293.10.0PREDICTED: zinc finger protein 4
RefseqXP_006469292.10.0PREDICTED: zinc finger protein 4
RefseqXP_006469290.10.0PREDICTED: zinc finger protein 4
RefseqXP_006469291.10.0PREDICTED: zinc finger protein 4
RefseqXP_006469288.10.0PREDICTED: zinc finger protein 4
RefseqXP_006469289.10.0PREDICTED: zinc finger protein 4
RefseqXP_015382847.10.0PREDICTED: zinc finger protein 4
RefseqXP_006448104.10.0hypothetical protein CICLE_v10016402mg
RefseqXP_006448108.10.0hypothetical protein CICLE_v10016402mg
RefseqXP_006448099.10.0hypothetical protein CICLE_v10016402mg
RefseqXP_006448105.10.0hypothetical protein CICLE_v10016402mg
RefseqXP_006448106.10.0hypothetical protein CICLE_v10016402mg
RefseqXP_006448102.10.0hypothetical protein CICLE_v10016402mg
RefseqXP_006448101.10.0hypothetical protein CICLE_v10016402mg
RefseqXP_006448100.10.0hypothetical protein CICLE_v10016402mg
RefseqXP_006448109.10.0hypothetical protein CICLE_v10016402mg
RefseqXP_006448103.10.0hypothetical protein CICLE_v10016402mg
RefseqXP_006448107.10.0hypothetical protein CICLE_v10016402mg
SwissprotQ392639e-48ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A067F4030.0A0A067F403_CITSI; Uncharacterized protein
TrEMBLV4UB170.0V4UB17_9R
STRINGPOPTR_0010s11330.11e-124(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-48zinc finger protein 4